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Run summary data
BIOM table statistics biom_table_summary.txt
Filtered BIOM table (minimum sequence count: 74196) table_mc74196.biom.gz
Rarified BIOM table (sampling depth: 74196) table_even74196.biom.gz
Beta diversity results (even sampling: 74196)
PCoA plot (weighted_unifrac) index.html
Distance matrix (weighted_unifrac)Excel format Text format
Principal coordinate matrix (weighted_unifrac) weighted_unifrac_pc.txt
PCoA plot (unweighted_unifrac) index.html
Distance matrix (unweighted_unifrac)Excel format Text format
Principal coordinate matrix (unweighted_unifrac) unweighted_unifrac_pc.txt

Need help?
You can get answers to your questions on the QIIME Forum.
See the QIIME tutorials for examples of additional analyses that can be run.
You can find documentation of the QIIME scripts in the QIIME script index.